You lack even a rudimentary understanding of evolution. Stop reading Harun Yayha.
Some dinosaurs evolved into birds, the rest could not survive catastrophic events and died out- not good.
If we are told to look for the signs of Allah within ourselves and the 'heavens', the outside world, and these are showing an evolutionary process according to the laws Allah created, then I see no problem between the 'secular' and the 'religious' where religious is the way of Allah, not man made beliefs.
It is about changing your concept of what constitutes the way of God and what you want to believe due to trying to reconcile false Bible accounts with the Qur'an and reality.